How to work with .man files?
1
0
Entering edit mode
3 days ago
Lalit • 0

Hi! I want to work on a transcriptome dataset. I downloaded the dataset from NCBI database but the file has a .man extension. I do not know how to open the file. Can someone please help?

The dataset is available at https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR3147022/SRR3147022 (~15mb).

man files ncbi transcriptome • 198 views
ADD COMMENT
0
Entering edit mode

what is the output of file your_file.man ?

ADD REPLY
0
Entering edit mode

Input: file Seq.man; Output: Seq.man: data

ADD REPLY
0
Entering edit mode

you will need to be a bit more specific: what kind of dataset, where did you download it from precisely, how did you download it, ... such information will only increase the usefulness of the replies you might get.

ADD REPLY
0
Entering edit mode
ADD REPLY
1
Entering edit mode

looks like a native NCBI SRA data. Have a look at NCBI sra-tools ?

$ wget -q -O - "https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR3147022/SRR3147022" | hexdump -C | head
00000000  4e 43 42 49 2e 73 72 61  88 19 03 05 01 00 00 00  |NCBI.sra........|
00000010  bc 04 00 00 00 00 00 00  04 00 00 00 91 04 00 00  |................|
00000020  00 00 13 00 4f 00 71 00  04 00 6c 6f 63 6b f4 20  |....O.q...lock. |
00000030  b5 56 00 00 00 00 24 01  00 00 06 02 00 6d 64 f2  |.V....$......md.|
00000040  20 b5 56 00 00 00 00 6d  01 00 00 01 01 00 00 00  | .V....m........|
00000050  22 00 00 00 00 03 00 63  75 72 f2 20 b5 56 00 00  |"......cur. .V..|
00000060  00 00 24 01 00 00 02 d8  f1 00 00 00 00 00 00 7e  |..$............~|
00000070  d3 00 00 00 00 00 00 03  00 6d 64 35 f2 20 b5 56  |.........md5. .V|
00000080  00 00 00 00 24 01 00 00  02 78 00 00 00 00 00 00  |....$....x......|
00000090  00 29 00 00 00 00 00 00  00 03 00 74 62 6c f1 20  |.).........tbl. |
ADD REPLY
1
Entering edit mode
3 days ago
GenoMax 117k

You should download this dataset (as fastq or fasta files) here: https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=run_browser&page_size=10&acc=SRR3147022&display=download

ADD COMMENT

Login before adding your answer.

Traffic: 1741 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6