Deleted:Align short sequence against ONT reads
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6 weeks ago

Hi there! I have many .fq files contained long reads (I got them with ONT MiniON). Also I have a .fasta file contains a specific short sequence (exon from different organism). I want to get if this short sequence aligns against these long reads (is there orthology between organisms?). I do not know what aligner to use, I used to work with short reads and usually I aligned them against a large reference genome (with bwa mem e.g.). In the beginning I do not want to assemble .fastq files. Thanks in advance!

reads ONT long genome alignment • 371 views
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