Difference between query_alignment_length, template_length, reference_length
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6 weeks ago
tien ▴ 10

Hello all,

I'm trying to understand how query_alignment_length, template_length, reference_length are calculated in pysam. I'm not sure if my interpretation as following is correct? I'm confused about the difference between reference_length and query_alignment_length

enter image description here

Thanks for your help.

pysam • 89 views
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