Entering edit mode
22 months ago
drbioengineer
•
0
Fpocket is a protein pocket detection algorithm. Its github link is here
When you give a pdb file to fpocket, it generates a file that scores the pocket areas of the corresponding protein. (or you can also give it a cif file.)
Let's take a look 6HX5 as an example.
When I run the code below in python environment,
!fpocket -f "hx/6hx5.cif"
output like
My question is that
How can I get sequence information of related pockets? (e.g. Y/SP/N/N/ ... )