Deleted:Getting pocket sequence information by using Fpocket
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22 months ago

Fpocket is a protein pocket detection algorithm. Its github link is here

When you give a pdb file to fpocket, it generates a file that scores the pocket areas of the corresponding protein. (or you can also give it a cif file.)

Let's take a look 6HX5 as an example.

When I run the code below in python environment,

!fpocket -f "hx/6hx5.cif"

output like

enter image description here

My question is that

How can I get sequence information of related pockets? (e.g. Y/SP/N/N/ ... )

binding fpocket pocket protein • 190 views
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