Entering edit mode
22 months ago
Priyanka
▴
10
I am trying to run Majiq on a linux server and I am getting the following error while running voila.
voila view majiq/build_individual/splicegraph.sql majiq/build_individual/IGIB1130001.psi.voila -j 1
voila view majiq/build_individual/splicegraph.sql
majiq/build_individual/IGIB1130001.psi.voila -j 1 2022-07-01
11:25:40,237 (PID:128480) - INFO - Command:
/lustre/priyanka.m/rna-seq/htslib-1.13/env/bin/voila view majiq/build_individual/splicegraph.sql majiq/build_individual/IGIB1130001.psi.voila -j 1 2022-07-01
11:25:40,238 (PID:128480) - INFO - Voila v2.4.dev3+g85d0781 2022-07-01
11:25:40,238 (PID:128480) - INFO - config file: /tmp/tmp0n5hwza1
2022-07-01 11:25:40,248 (PID:128480) - INFO - Creating index:
/lustre/priyanka.m/rna-seq/alt_max/majiq/build_individual/IGIB1130001.psi.voila
2022-07-01 11:25:40,254 (PID:128480) - ERROR - 'ENSG00000124107.5'
Traceback (most recent call last): File
"/lustre/priyanka.m/rna-seq/htslib-1.13/env/lib/python3.8/site-packages/rna_voila/run_voila.py",
line 438, in main
args.func() File "/lustre/priyanka.m/rna-seq/htslib-1.13/env/lib/python3.8/site-packages/rna_voila/view/views.py",
line 79, in run_service
run_app = get_app() File "/lustre/priyanka.m/rna-seq/htslib-1.13/env/lib/python3.8/site-packages/rna_voila/view/views.py",
line 105, in get_app
Index() File "/lustre/priyanka.m/rna-seq/htslib-1.13/env/lib/python3.8/site-packages/rna_voila/index.py",
line 49, in __init__
index() File "/lustre/priyanka.m/rna-seq/htslib-1.13/env/lib/python3.8/site-packages/rna_voila/index.py",
line 402, in _psi
voila_index.append(self._psi_pool_add_index(args)) File "/lustre/priyanka.m/rna-seq/htslib-1.13/env/lib/python3.8/site-packages/rna_voila/index.py",
line 339, in _psi_pool_add_index
gene_name = g[gene_id] KeyError: 'ENSG00000124107.5'
Before this majiq build and majiq psi ran very smoothly without any error.
Can anyone suggest any way to overcome this error?
