TPM TMM DESeq2 normalization which choose to draw the heatmap for all samples
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5 weeks ago
dew ▴ 10

Dear guys,

May I know which method is recommended to draw the heatmap for all the samples(control, treat1, treat2, treat3... treat8)?

I read the articles/blogs and still do not fully understand the best choice...

Thank you very much for all your guidance!

Best,

RNA-Seq normalization heatmap • 188 views
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Entering edit mode
5 weeks ago
ATpoint 64k

You could follow this, using the normalized counts on log2 scale Scaling RNA-Seq data before clustering?

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