Minimum and maximum depth filter - vcftools
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5 weeks ago
Matteo • 0

Hello,

I would like to implement the minimum and maximum depth filters in vcftools using the --minDP and --maxDP flags. Is there a standard way to calculate the thresholds for such filters?

Thanks in advance!

Matteo

depth vcftools • 157 views
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vcftools is deprecated use bcftools -i 'INFODP>1 && INFO/DP<1000'

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