Minimum and maximum depth filter - vcftools

Question

[Matteo]

Hello,

I would like to implement the minimum and maximum depth filters in vcftools using the --minDP and --maxDP flags. Is there a standard way to calculate the thresholds for such filters?

Thanks in advance!

Matteo

[Pierre Lindenbaum]

vcftools is deprecated use bcftools -i 'INFODP>1 && INFO/DP<1000'