setting up Kallisto software
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Entering edit mode
5 weeks ago

Hi,

I have tried to set up Kallisto software - following the instructions on https://protocols.hostmicrobe.org/conda without any luck. I need this software to align reads to a reference genome for RNA sequencing analysis. It worked up until I used the command: conda create --name rnaseq on anaconda prompt (miniconda3) as it came up as an error.

Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. PackagesNotFoundError: The following packages are not available from current channels: - kallisto – PackagesNotFoundError: The following packages are not available from current channels: - kallisto Current channels: - conda.anaconda.org/bioconda/win-64 - conda.anaconda.org/bioconda/noarch - conda.anaconda.org/conda-forge/win-64 - conda.anaconda.org/conda-forge/noarch - repo.anaconda.com/pkgs/main/win-64

  • repo.anaconda.com/pkgs/main/noarch - repo.anaconda.com/pkgs/r/win-64 - repo.anaconda.com/pkgs/r/noarch - repo.anaconda.com/pkgs/msys2/win-64 - repo.anaconda.com/pkgs/msys2/noarch To search for alternate channels that may provide the conda package you're looking for, navigate to anaconda.org and use the search bar at the top of the page.

Does anyone know how I might be able to correct this?

Thanks

rnaseqanalysis anaconda kalliosto miniconda software • 155 views
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Entering edit mode
5 weeks ago

Kallisto gives you the chance to download the binaries. It is a simple and compressed file that will allow you to reach the program seamlessly

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