Data extraction from blastn aligned hit
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5 weeks ago
khq5801 ▴ 10

Hi,

I would like to extract data such as length, identities, etc., using perl command or any bash script from the blastn results obtained by aligning my miRNA reads to mirbase mature miRNA. Kindly give your valuable suggestion.![screenshot of alignment]

blastn R bioperl perl ubuntu • 122 views
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Please provide more info, such in what format do you have the blast output. You also might want to check out the -outfmt blast parameter.

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