How to identify the genome build a dataset was aligned too?
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2.0 years ago
nanodano ▴ 30

Is there any way to figure out which reference genome your dataset was aligned too? I've been given a dataset that looks like this (see below) but I'm not sure how to identify which reference build it's aligned too. Also, where can you download recombination maps for different build?

Thanks!

1       rs140435168     0       256586  G       T
1       rs201475892     0       534247  T       C
1       rs528621909     0       566870  0       T
1       rs375217967     0       568800  G       A
1       rs113340103     0       705452  0       T
1       rs4565649       0       713092  0       G
grch ucsc hapmap genome build • 518 views
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1
Entering edit mode
2.0 years ago
mark.ziemann ★ 1.9k

My suggestion is to go to the UCSC genome browser and search for those SNP accession numbers with the different builds Hg38, Hg19, Hg18, etc until you get a match

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