setting overlap in DADA2 in qiime2
0
0
Entering edit mode
21 months ago
blur ▴ 280

Hi,

I want to change the size of overlap in the DADA2 in QIIME2 The default is 12 - I'd like to try 4 and 8, as my reads are 150bp long.

I found a command --p-min-overlap in the documentation, but when I tried to run it on my QIIME version 2020.8, it does not appear to have this option.

Does anyone know if it is possible to set this parameter in my QIIME2 version?

Thanks

dada2 qiime qiime2 • 984 views
ADD COMMENT
0
Entering edit mode

I think the option was added from the 2021.4 version, and it is not available for your current version.

ADD REPLY
0
Entering edit mode

I upgraded my version. Thank you

ADD REPLY

Login before adding your answer.

Traffic: 2906 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6