Question: Command Line Genome Browser
0
gravatar for Lee Katz
5.3 years ago by
Lee Katz2.9k
Atlanta, GA
Lee Katz2.9k wrote:

Hi, I was wondering if there is a rudimentary version of a genome browser for command line. Sometimes I am in a position where I don't have x windows and so I'd like a replacement. Like when I use Lynx instead of Firefox sometimes, or samtools tview instead of IGV...

If there isn't one I think this would be an awesome project for a programmer :)

ADD COMMENTlink modified 5.3 years ago by Istvan Albert ♦♦ 80k • written 5.3 years ago by Lee Katz2.9k
0
gravatar for Istvan Albert
5.3 years ago by
Istvan Albert ♦♦ 80k
University Park, USA
Istvan Albert ♦♦ 80k wrote:

Here is a tool posted here not so long ago

PyBamView

ADD COMMENTlink written 5.3 years ago by Istvan Albert ♦♦ 80k

I appreciate it but it still requires x windows even though it has a very ascii feel.

ADD REPLYlink written 5.3 years ago by Lee Katz2.9k

Also I don't think it shows genes, etc, like a genome browser would. It looks like a tview clone but with lots of features.

ADD REPLYlink written 5.3 years ago by Lee Katz2.9k
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