Command Line Genome Browser
1
0
Entering edit mode
7.4 years ago
Lee Katz ★ 3.1k

Hi, I was wondering if there is a rudimentary version of a genome browser for command line. Sometimes I am in a position where I don't have x windows and so I'd like a replacement. Like when I use Lynx instead of Firefox sometimes, or samtools tview instead of IGV...

If there isn't one I think this would be an awesome project for a programmer :)

annotation command-line genome-browser • 2.2k views
ADD COMMENT
0
Entering edit mode
7.4 years ago

Here is a tool posted here not so long ago

PyBamView

ADD COMMENT
0
Entering edit mode

I appreciate it but it still requires x windows even though it has a very ascii feel.

ADD REPLY
0
Entering edit mode

Also I don't think it shows genes, etc, like a genome browser would. It looks like a tview clone but with lots of features.

ADD REPLY

Login before adding your answer.

Traffic: 1521 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6