Pathway Enrichment Analysis according to tumor mutation burden.
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14 months ago
weiruolun • 0

enter image description here

Hi, I wanna enrich associated pathway according to the value of tumor mutation burden on R, just like this figure from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8235024/, and I cannot find out a certain way to do so, any suggest is great´╝ü

TMB TCGA R Maftools • 438 views
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Entering edit mode
14 months ago
mark.ziemann ★ 1.8k

You could use clusterprofiler to run an over-representation test in R.

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