Horizontal Gene Tranfer/Recombination

Question

[Jaykumar]

Hello everyone,

Could anybody please suggest any good tools to predict HGT/recombination profile from whole genome sequences?

(P.S.: I have 2 to 5 genomes per species. )

Answer 1

[mark.ziemann]

Could you have a look at AvP, it might be the right tool for you.

[Jaykumar]

Sure, Thank you! I will try it.