Herald:The Biostar Herald for Monday, August 01, 2022
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Biostar 960

The Biostar Herald publishes user submitted links of bioinformatics relevance. It aims to provide a summary of interesting and relevant information you may have missed. You too can submit links here.

This edition of the Herald was brought to you by contribution from Istvan Albert, and was edited by Istvan Albert,


Realizing the promise of biodiversity genomics with highly accurate long reads | bioRxiv (www.biorxiv.org)

Despite shorter reads and less coverage, HiFi reads outperformed ONT reads in all assembly metrics tested and allowed for accurate assembly of the repetitive ∼20-Kb H-fibroin gene

submitted by: Istvan Albert


From raw metagenome reads to phyloseq taxonomy table using sourmash gather and sourmash taxonomy (taylorreiter.github.io)

This blog post seeks to close that gap a bit by demonstrating how to go from raw metagenome reads to a phyloseq taxonomy table using sourmash gather and sourmash taxonomy to make the actual taxonomic assignments.

submitted by: Istvan Albert


scRNA-tools (www.scrna-tools.org)

The scRNA-tools database records details of software tools designed for analysing scRNA-seq data. Each tool is categorised according to the analysis tasks it can be used for.

submitted by: Istvan Albert


GitHub - epi2me-labs/wf-human-sv: Structural variation workflow (and benchmarking) using lra and cuteSV (github.com)

This workflow provides an easy way to call structural variants in human genomic data

submitted by: Istvan Albert


GitHub - Illumina/Nirvana: The nimble & robust variant annotator (github.com)

"The nimble & robust variant annotator" from Illumina

submitted by: Istvan Albert


submitted by: Istvan Albert


submitted by: Istvan Albert


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