Issue with FastML Ancestral Sequence Reconstruction
0
0
Entering edit mode
7 days ago
CM • 0

Dear forumers, I've been trying to generate an ancestral sequence using the ancestral sequence reconstruction software FAstML. I am using the command line and have made sure the input files (both the aligned sequences and the phylogenetic tree) are in the correct format, but every time I start the program it terminates, showing the following message:

*#"""��#=�������<gfff� was found in the tree file but not found in the sequence file. Please, Re-run program with _intersectTreeAndSeq to produce new MSA and Tree.

System Error: Numerical result out of range fastml: errorMsg.cpp:41: static void errorMsg::reportError(const string&, int): Assertion `0' failed. Aborted (core dumped)*

It claims that some elements are found in the tree file but not in the sequence file, and I've checked multiple times both files and made sure the sequences present matched. Could the issue be elsewhere ? Is it a bug ? I have seen other people deal with this error message, but never came across a solution. Any advice or insight would be much appreciated,

Thank you !

FastML reconstruction ancestral error _intersectTreeAndSeq • 88 views
ADD COMMENT

Login before adding your answer.

Traffic: 2075 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6