How to merge dataset with 1000 Genomes?
0
0
Entering edit mode
6 days ago
Karan • 0

I'm new to the bioinformatics space, and I'm attempting to merge one dataset with the 1000 Genomes dataset (as the reference).

However, I'm unsure on how to do this. I've researched a bit, and some people suggested to split the 1000G by chrosome and then attempt to merge that way? I'm not sure what the point of this is.

I'm currently following this: https://martha-labbook.netlify.app/posts/extracting-data-for-variants-common-in-both-file-sets/. Can someone tell me if this is the right way to go?

ALSO, would I need to do QC on 1000G prior to merging?

I would love any help.

plink 1000g merge • 101 views
ADD COMMENT

Login before adding your answer.

Traffic: 2041 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6