Entering edit mode
20 months ago
sunnykevin97
▴
980
Hi,
Can one any one know the maximum size of the D-loop in vertebrates (fish).
We recently sequenced the whole genome of fish using Pacbio HIFI reads 99% accuracy.
After extracting the replicon from the whole genome data after annotation we are able to find a D-Loop region of size 3594.
I did a blastn to check the sequence similarity, it turned out to be only 1200 nt matched.
Suggestions appreciated.
In fish it ranges from 800 - 1200 bp.
Duplicated control regions may be due to concerted evolutionary process.