error in kmergenie compilation
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6 weeks ago

I downloaded kmergenie zip file from the link given as source in the kmergenie home page and extracted it into /vol folder in my system. I also have python and R installed in my system. But when I execute kmergenie with the following command:

./kmergenie R1.fastq -s 2 -o output.txt -t 10

It says,

running histogram estimation
setting maximum kmer length to: 151 bp
Computing histograms from (k=15 to k=121): cannot find ntCard/ntcard in either, /vol/kmergenie-1.7051
Did you type 'make' before installing kmergenie? If so, contact a developer

Can someone please help with this? Thank you!

kmergenie ntcard error • 322 views
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6 weeks ago
GenoMax 120k

As the message asks, did you compile the program using make?

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No I did not compile the program using make. I just extracted the kmergenie folder. Changed my present working directory to that folder and executed kmergenie using the command I had typed before.

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As the README says, you have to compile the program before you can use it.

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Thank you for pointing that out. I compiled it and it now works. Thanks a lot!

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