I'm trying to analyse the results from Eggnog mapper - so far I have got the genes list and can get a gene ontology from this using ShinyGO....
But it's a shame when I have GO terms/ KEGG/ PFAMS in the excel output, Would it be possible to load them into Blast2GO to make nice bar charts? I have tried the .anno file, and it seems like it doesn't recognise the GO terms already found; the eggnog fasta isn't accepted either.
Or does anyone know of alternative software/ online sites to help summerise the data? Many tools are not set up to support bacteria so I would prefer to summerise the Eggnog output.
Many thanks in advance