ChIPQC Error
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Entering edit mode
7 weeks ago
tsomakiank ▴ 10

Hello everyone! I am trying to run ChIPQC in a dataset but I keep getting the below error:

    Error in ChIPQC(experiment = df, annotation = "mm10", chromosomes = NULL) : 
      Unable to process. Each bam file must be associated with at most one peakset.

This is the dataframe that I use as the samplesheet for the experiment parameter

SampleID    Tissue   Factor Condition Treatment Replicate                                                          bamReads  ControlID                                                            bamControl
ChIP SRR1015031 NIH_cells H3K27me3      ChIP        IP         1 C://Users//Konstantinos//Desktop//chip//final_SRR1015031_test.bam SRR1015012 C://Users//Konstantinos//Desktop//chip//final_SRR1015012_controlt.bam
                                                            Peaks PeakCaller
ChIP C://Users//Konstantinos//Desktop//chip//h3k27me3_summits.bed        bed`enter code here`
ChIP-seq ChIPQC • 185 views
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