Hello everyone! I am trying to run ChIPQC in a dataset but I keep getting the below error:
Error in ChIPQC(experiment = df, annotation = "mm10", chromosomes = NULL) : Unable to process. Each bam file must be associated with at most one peakset.
This is the dataframe that I use as the samplesheet for the experiment parameter
SampleID Tissue Factor Condition Treatment Replicate bamReads ControlID bamControl ChIP SRR1015031 NIH_cells H3K27me3 ChIP IP 1 C://Users//Konstantinos//Desktop//chip//final_SRR1015031_test.bam SRR1015012 C://Users//Konstantinos//Desktop//chip//final_SRR1015012_controlt.bam Peaks PeakCaller ChIP C://Users//Konstantinos//Desktop//chip//h3k27me3_summits.bed bed`enter code here`