Does Cellranger filter out doublet?
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7 weeks ago
Emily ▴ 30

Does 10x's Cellranger filterout doublet or does it require additional steps to filter those out using the files from "filtered_feature_bc_matrix" generated by the software

cellranger scRNA • 300 views
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Thank you. Do you know if there is tutorial on how to execute scrublet (scanpy)? The only thing i can find is this https://scanpy.readthedocs.io/en/latest/generated/scanpy.external.pp.scrublet.html#scanpy-external-pp-scrublet so im a bit confused as to how to use the code. Do i just do external.pp.scrublet(adata)?

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