Control detected variants for normal samples in dragen
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7 weeks ago
Nemo • 0

Hi, I have some samples from covid cases and normal people. I have already processed and aligned their fastq files to get their variations. I have lineage covid data to compare and contrast with my detected variants as well. As I see in the results, even for some of the normal people there are some variants from delta and omicron lineages.

I would like to change some parameters to somehow prevent reporting such variants for normal people. I am using dragen by illumina for alignemnts and gatk for variants calling.

I would appreciate any help in this case.

calling illumina variants dragen alignment • 169 views

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