Hello guys Quick question, I trying to scan for some specific domains and others if present in protein of interest. I used InterProscan, but InterProScan did not predict all the domains. However, when I scan this proteins in PFAM and SMART I find these domains. Based on my knowledge InterProScan also include database such PFAM, SMART and Conserved domain database. How come I am not able to predict them when using InterProScan, whereas if I am using for example PFAM directly I get them.
Thanks in advance