inquiry related to gtex normalization
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7 weeks ago
rheab1230 ▴ 110

Hello, I want to inverse quantile normalized by gene count data for brain cortex tissue. I am trying to follow the gtex qtl pipeline for this: https://github.com/broadinstitute/gtex-pipeline/blob/master/qtl/README.md But I think this is primarily for eqtl. Can I follow the same pipeline but not for eqtl, I just want to normalized my gene count file and not do any eqtl analysis on this?

gene GTEX expression tissue normalization brain • 118 views
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