pathway analysis of cell clusters in single-cell RNA-sequencing data
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6 weeks ago
kgiannikou • 0

Hello,

Which tool would you suggest for pathway analysis of cell clusters in single-cell RNA-sequencing data?

Has anyone used ReactomeGSA package or scTPA (http://sctpa.bio-data.cn/sctpa)?

Thank you

cell scRNA-seq clusters pathway analysis • 186 views
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I haven't used those specific packages but you might also want to look at GSVA https://www.bioconductor.org/packages/release/bioc/html/GSVA.html

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