gosling: import custom genome sequence
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23 months ago
Peter ▴ 10

Dear community, recently I came across gosling for the visualization of genomic data and I find it very appealing. As a first project, I try to figure out how to import custom genome sequences and annotation data to generate an interactive view of the annotations in gosling, similar to a genome browser. Unfortunately, I could not find information on how to load data (fasta sequences, gff files, bed files) into gosling. Reading the available documentation, it seems that only certain versions of the human and mouse genome are supported as data source to which annotation data can be mapped. And it seems that other data, such as tables with genome coordinates, needs to be loaded by adding a corresponding URL. Is it also possible to import a genome sequence and a corresponding annotation track from my local computer, and if so, how do I tell gosling where to look for the data? Thanks for your help, Peter

genome gosling annotation • 712 views
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Custom genomes have now been added to gosling --> How can I add custom genome to gosling?

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