TopMed freeze8 reference panel download
1
1
Entering edit mode
19 months ago
dtzhu337 ▴ 10

Hi All,

I am quite new to the field of genotype imputation. I am performing a genotype imputation and would like to use the TopMed freeze8 as the reference panel, and IMPUTE5 as the software. I have a hard time locating the TopMed freeze8 reference panel.

https://www.well.ox.ac.uk/~wrayner/tools/ kindly provided a tool to generate reference panel from freeze5 file and pointed to https://bravo.sph.umich.edu/freeze5/hg38/ for downloading. Does any one know if the "ALL.TOPMed_freeze5_hg38_dbSNP.vcf.gz" is the exact file that can be downloaded from the bravo website? The file I downloaded from bravo website only contains summary statistics.

Meanwhile, does anyone know if I can use the same method to generate freeze8 reference panel?

Thank you in advance

reference panel TopMed imputation Genotype • 1.1k views
ADD COMMENT
0
Entering edit mode
ADD COMMENT

Login before adding your answer.

Traffic: 2356 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6