Repeatmasker results
1
0
Entering edit mode
12 weeks ago

I input the fasta sequence of a novel fungus from spades assembler into repeatmasker (using rmblast) with the following command: ../RepeatMasker/RepeatMasker/ -species Fungi -xsmall x.fasta

After running the results are: No repetitive sequences were found in x.fasta

Can someone please let me know what can this mean?

Thank you!

results repeatmasker doubt • 241 views
ADD COMMENT
1
Entering edit mode
12 weeks ago
Mensur Dlakic ★ 21k

After running the results are: No repetitive sequences were found in x.fasta

The meaning is obvious.

If you are not sure that RepeatMasker is installed correctly, I suggest you run it on a short sequence with known repeats and verify they can be identified.

ADD COMMENT
0
Entering edit mode

Ok. Thank you!

ADD REPLY

Login before adding your answer.

Traffic: 2758 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6