how to calculate %of missing genotype in vcf file

Question

[rheab1230]

Hello, I have a vcf file which has missing genotype for certain samples. I want to find % of missing genotype in my vcf file overall. Does anyone know any software which can give me the percentage? Thank you.

[William]

Duplicate of How to determine percentage missing genotypes in VCF/BCF?

Answer 1

[4galaxy77]

plink2 --vcf in.vcf --missing

Answer 2

[Pierre Lindenbaum]

bcftools https://samtools.github.io/bcftools/howtos/plugin.fill-tags.html

INFO/F_MISSING Number:1  Type:Float    ..  Fraction of missing genotypes (all samples, experimental)