Convert UCSC BAM file to Ensembl
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15 days ago

Hi, I'm looking for a way to convert my UCSC BAM files to an Ensembl format. Is there an easy way to do it? Thanks, Elad

UCAC Ensembl BAM • 209 views
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how do you define an "Ensembl format" ?

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I have BAM files that where aligned to hg19 which is a UCSC assembly, and I what it to be aligned to grch37 instead, an ensembl assembly.

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From what I understood the gene annotation is also different, but yes, the chromosome notation too.

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Thanks for the links. I now understand what I need to do!

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