Hi there, I am running genomescop for 100 of isolates. I would like to extract information from the summary file (a text file) to a csv or excel of each isolate. Please suggest a bash loop for the extraction information.
Here is an example of the summary file.
GenomeScope version 1.0 k = 21 property min max Heterozygosity 1.23503% 1.24183% Genome Haploid Length 70,702,656 bp 70,756,833 bp Genome Repeat Length 17,241,190 bp 17,254,402 bp Genome Unique Length 53,461,466 bp 53,502,431 bp Model Fit 95.7749% 98.4718% Read Error Rate 0.106981% 0.106981%