Which are the best Cell - Cell communication packages for single cell RNASeq timeseries data?
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22 months ago
AB ▴ 360

I have a single cell data on mouse lung at homeostasis and at 4 different time points after injury. I've read a couple of review papers on different packages available for cell-cell interaction- cellphonedb and cellchat being the most popular ones. Others being SingeCellSignalR, iTALK and NicheNet. All have their pros and cons and I'm confused about which one would be the right one to choose and how to visually represent the cell-cell communication in the time series data

R scrna seurat • 411 views

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