I am trying to perform fastqc on data downloaded from NCBI for rna sequencing.
However I have samples that are in CEL.Gz file format e.g. GSM4837048_JX65.CEL.gz
But the tutorial has samples in SRR8668755.fastq.gz file format
Do you know if its still possible for me to perform fastqc for quality control on Mac in terminal using the following commands with CEL.GZ file:
conda activate rnaseq fastqc GSM4837048_JX65.CEL.gz
I get the following error message: Failed to process GSM4837048_JX65.CEL.gz
Thanks for your help!