calling peaks in ChIP-seq datasets from bedgraph files
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9 weeks ago
Bogdan ★ 1.3k

Hi everyone.

Continuing a previous posting (Obtain ChIPseq peaks from a bedgraph file with continuous regions), which other peak callers (beside MACS2) may call ChIP-seq peaks when it needs to start from a bedgraph file (not from a bam file) ?

Thanks a lot,

Bogdan

ChIP-seq MACS2 • 229 views
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epic2 also allows .bed/.bedgraph files as inputs. It is a peak caller particularly useful for quite broad marks.

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