Good morning, I'm making my first attempt to run Multi-trait analysis of GWAS (aka mtag) package (https://github.com/JonJala/mtag/wiki/Tutorial-1:-The-Basics). I'm not so confident with python, so probably I'm missing something. Indeed, after the activation of the environment, when i run the current script:
python mtag.py \
--sumstats CC_preMTAG.txt,Non_cancer_illness_code_self_reported_type_2_diabetes_preMTAG.txt \
--out tutorial_results_1.1NS \
--n_min 0.0 \
--stream_stdout &
It gives me the following errors:
mtag.py: error: unrecognized arguments: \
(myenv) C:\Users\Salvatore\Desktop\CC_MTAG\mtag>--sumstats CC_preMTAG,Non_cancer_illness_code_self_reported_type_2_diabetes_preMTAG \
"--sumstats" is not recognized as an internal or external command,
an executable program or batch file.
(myenv) C:\Users\Salvatore\Desktop\CC\CC_MTAG\mtag>--out tutorial_results_1.1NS \
"--out" is not recognized as an internal or external command,
an executable program or batch file.
(myenv) C:\Users\Salvatore\Desktop\CC_MTAG\mtag>--n_min 0.0 \
"--n_min" is not recognized as an internal or external command,
an executable program or a batch file.
(myenv) C:\Users\Salvatore\Desktop\CC_MTAG\mtag> --stream_stdout &
"--stream_stdout" is not recognized as an internal or external command,
an executable program, or a batch file.
Any suggestions?