macs2 bdgpeakcall only gives a few peaks
0
0
Entering edit mode
21 months ago

Hi, all. I want to call peaks from bigwig file. I first transfer bigwig to bedgraph by using "bigWigToBedGraph A.bw A.bedgraph", then I use "macs2 bdgpeakcall -i A.bedgraph -o A" to call peaks from bedgraph. However, there are only a few peaks(8 peaks) shown up. I am pretty sure there are many peaks by viewing the bigwig file in IGV. Does anybody have a good idea about why this happens? Thanks!

peaks macs2 Chip-seq bdgpeakcall • 485 views
ADD COMMENT

Login before adding your answer.

Traffic: 1382 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6