qc3C software for testing Hi-C data
0
0
Entering edit mode
9 weeks ago
gubrins ▴ 260

Heys,

I've just found this software called qc3C for testing the quality in Hi-C data (https://github.com/cerebis/qc3C). I was wondering if any of you used it, as I created the multiqc file out of it but I am struggling a bit to understand it.

Around 60% of my reads were accepted and are marked as valid. Is this a good result?

qc3C Hi-C • 183 views
0
Entering edit mode

There is a good paper on qc3C: Reference-free quality control for Hi-C sequencing data which may provide more information as to whether your output mutltiqc file tells you what you want to know.