Why the number of genes decreased after dds (DESeqDataSetFromMatrix)?
0
0
Entering edit mode
8 weeks ago
Amr ▴ 140

Why the number of genes decreased after dds (DESeqDataSetFromMatrix)?

The number of genes in the data decreased to half after DESeqDataSetFromMatrix on R, why?

DESeq2 R dds • 240 views
ADD COMMENT
1
Entering edit mode

Just a guess, but count how many have 0 counts in all samples before and after running that function.

ADD REPLY
1
Entering edit mode

This function does not do any filtering at all. Please show code, this is mandatory for any question asked here as one cannot read minds or see your screen.

ADD REPLY

Login before adding your answer.

Traffic: 1403 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6