Is there a setting in GSEA software to filter counts less than 10 before go for GSEA analysis?
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8 weeks ago
Amr ▴ 140

Is there in the setting in GSEA software to filter counts less than 10 before go for GSEA analysis?

GSEA • 271 views
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Which GSEA software, specifically?

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24 days ago
M.O.L.S ▴ 100

Perhaps you could change the count data into a tibble using tibble from tidyverse and then use the filter function to filter the dataset. Then you could put it through gsva analysis in R. You may be using the estimate package or singscore but the tibble function would work to filter the data.

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