Deleted:Tool for Genome Instability measurement

Question

[storm1907]

Hello, I have a task to investigate chromosomal instability in human germline exome samples. Currently I have 3 types of files available: 1) bam; 2) bedgraph; 3) vcf

No separate control samples are sequenced.

Is there any chromosomal instability index investigation package suitable for such case (input: bam/vcf/bedgraph; no controls sequenced) that can also be launched by a beginner? I do not have good experience with CNV pipelines or R language, so any help will be appreciated

Thank you!