Hi guys, I need to phase my genotypes using SHAPEIT2 software. I'm using the following indications: https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html#prephasing.
I need to run the following command line:
shapeit -B gwas \ -M genetic_map.txt \ -O gwas.phased
Concerning the -M option, I need a genetic map, and precisely I need the
HapMap b37 genetic map.
I've tried to download it at the following link: http://www.griv.org/shapeit/pages/geneticmap.html but I haven't succeeded in downloading it...
Someone knows where I can find this file for phasing my genotypes?