Entering edit mode
5 months ago
young_bioinformatician ▴ 170
I have run freebayes for variant-calling and I forgot to set the ploidy parameter. Now my result is based on ploidy level 2, but I want to chage it to haploid. Is there any way to change diploid to haploid in VCF file instead re-running freebayes?
My final vcf file is recoded.
So It is like, 0/0, 0/1, 1/1 and so on...
with genotypes like
0/1, you'd better re-run freebayes...
Thank you, Pierre. Uh how I made such a mistake.. Generating a new one takes 4 days...
I just checked and I have also raw vcf. Does it matter?