Entering edit mode
17 months ago
Umer
▴
50
Hello all,
I am new to this whole realm of PLINK and SNP Arrays. I have got 3 plink datasets all .ped, .map, and .fam files. I want to merge them to do a population genetic diversity analysis. One dataset is Goat 70K SNP array by Illumina. The remaining two are 50K arrays of goat genome.
My questions are
- Is it ok to merge datasets from different arrays?
- How can I merge them (first I thought of just extracting all the common SNPs from 3 datasets and then concatenating them and sorting by chromosome number)
- Is there any kind of possible problems that can arise from merging and have to be addressed after merging datasets during the analysis?
- What are the analyses I need to perform for the population genetics study? ( I have been through some papers but all of them do different analyses.)