Any way to search [GEO, etc] by library prep protocol (looking for published single-cell multi-ome data)?
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17 months ago
mk ▴ 290

does anyone know if there is a way to search (eg GEO, zenodo, etc) for paired RNA/ATAC datasets like this one?

Ideally, there would be a way to search databases by library prep protocol. Here is the illumina multiome protocol that was used for the above data.

single-cell atac-seq rna-seq multiomics • 571 views
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mk : I corrected the link for Illumina multiome protocol PDF since the link you had contained strange characters. Please verify the link I included is correct.

Search https://sra-explorer.info/ with terms 10x multiome to find datasets you are looking for.

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