incorrect data format uploaded to SRA?
0
0
Entering edit mode
20 months ago

Hi all,

I've never worked with sequencing data before, so it's a learning curve just to download the proper files from SRA (I will be using already published data).

The data I'm interested in is from geo accession GSE151761. All of the runs are supposed to be paired (and are listed as such) but whenever I run fasterq-dump, I only get 1 file. Looking at SRR11920852 for example, it is listed as paired but only has 1 read per spot/ the reads tab only shows 1 read.

Was the data submitted in the wrong format? Or am I missing something?

Thanks!

fastq sra • 450 views
ADD COMMENT
0
Entering edit mode

fasterq-dump SRR11920852 should download the paired-end data (if it's paired)

ADD REPLY

Login before adding your answer.

Traffic: 2734 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6