Finding Coordinates Of Genes In Genome

Question

[Abhi]

Hi Guys

I think I have a very trivial question. I have a multi-fasta file of rRNA genes. I need to find their location in the genome. It will be easy to blast them but not sure how can I extract the start and end positions of the best match on the genome for each quey.

Thanks! -Abhi

Answer 1

[Abhi]

Hey Guys

I think I got the answer. I used megablast and changed the output to report the tab -delimated one line format.

-Abhi