How to make alpha diversity boxplot? I am trying to perform alpha diversity and I performed scatter plot for shannon measure,How can I make boxplot??
meta.physeq = sample_data(meta)
tax <- otu_table(tax,taxa_are_rows=FALSE)
physeq.alpha = phyloseq(ASV, tax, meta.physeq)
sample_data(physeq.alpha)$shannon.physeq <- estimate_richness(physeq.alpha, measures="Shannon")