QUAL differences for different caller
0
0
Entering edit mode
19 months ago
bitpir ▴ 240

Hi,

I ran freebayes and vardict using the same sample and saw that the QUAL for both callers are very different. The variant below are the false-positive variants. Freebayes suggests do filtering using QUAL > 20; but it won't work for vardict since the QUAL for these variants are high.

Does anyone know why QUAL for these callers are so different? How should one filter for variants if Vardict was used? Thanks for the help!

enter image description here

score vardict quality vcf freebayes calling variant • 361 views
ADD COMMENT

Login before adding your answer.

Traffic: 2607 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6